Supplementary Table 18. cis_trans_OT.,,,,,,,,,,,,,
lncrna,mrna,chr_mrna,start_mrna,end_mrna,diff_mrna,chr_lncrna,start_lncrna,end_lncrna,sub_lncrna,diff_lncrna,uplim,downlim,regulation
ATP6V0E2-AS1,HOXA11,NA,NA,NA,NA,chr7,149567386,149606793,Sense,Up,149267386,149906793,trans
LINC00390,SPATS2,chr12,49760367,49921205,Down,chr13,44649456,44711480,Antisense,Down,44349456,45011480,trans
LINC00466,TYRO3,chr15,41849873,41871536,Down,chr1,63624706,63782955,Sense,Down,63324706,64082955,trans
LINC00847,HOXA11,NA,NA,NA,NA,chr5,180256955,180262726,Sense,Up,179956955,180562726,trans
LINC00894,HOXA11,NA,NA,NA,NA,chrX,149101199,149392815,Sense,Up,148801199,149692815,trans
LINC00943,SPATS2,chr12,49760367,49921205,Down,chr12,127210815,127230800,Sense,Down,126910815,127530800,trans
LINC01016,SPAM1,chr7,123565286,123611468,Down,chr6,33835282,33864691,Sense,Down,33535282,34164691,trans
lnc-AC107021.1-9,SPATS2,chr12,49760367,49921205,Down,chr3,145091511,145098582,Intergenic,Down,144791511,145398582,trans
lnc-ACMSD-6,LHCGR,NA,NA,NA,NA,chr2,134924890,134928661,Intergenic,Down,134624890,135228661,trans
lnc-ADAMTS16-2,LHCGR,NA,NA,NA,NA,chr5,4866520,4874872,Intergenic,Down,4566520,5174872,trans
lnc-ADAMTS16-2,SOX5,NA,NA,NA,NA,chr5,4866520,4874872,Intergenic,Down,4566520,5174872,trans
lnc-AL033381.1-4,SPATS2,chr12,49760367,49921205,Down,chr6,1143794,1157308,Intergenic,Down,843794,1457308,trans
lnc-APEX1-2,SPATS2,chr12,49760367,49921205,Down,chr14,20906140,20909427,Intergenic,Down,20606140,21209427,trans
lnc-ATPAF2-2,HOXA11,NA,NA,NA,NA,chr17,18007558,18020918,Antisense,Up,17707558,18320918,trans
lnc-BACE1-2,SOHLH1,NA,NA,NA,NA,chr11,117077395,117089180,Sense,Down,116777395,117389180,trans
lnc-BARHL2-4,SPATS2,chr12,49760367,49921205,Down,chr1,91067691,91089795,Intergenic,Down,90767691,91389795,trans
lnc-BCL6-9,SPATA21,chr1,16713612,16763919,Down,chr3,188052372,188061851,Antisense,Up,187752372,188361851,trans
lnc-BOD1-1,TYRO3,chr15,41849873,41871536,Down,chr5,173084842,173252321,Sense,Down,172784842,173552321,trans
lnc-C15orf32-3,HOXA11,NA,NA,NA,NA,chr15,93146139,93171193,Antisense,Up,92846139,93471193,trans
lnc-C6orf201-11,SPATS2,chr12,49760367,49921205,Down,chr6,4198786,4208376,Intergenic,Down,3898786,4508376,trans
lnc-C6orf201-18,SPATS2,chr12,49760367,49921205,Down,chr6,4306476,4316060,Intergenic,Down,4006476,4616060,trans
lnc-C8orf22-13,SPAM1,chr7,123565286,123611468,Down,chr8,49665513,49669734,Intergenic,Down,49365513,49969734,trans
lnc-CACNA2D3-2,SPATS2,chr12,49760367,49921205,Down,chr3,55330227,55334766,Intergenic,Down,55030227,55634766,trans
lnc-CALHM1-1,SPATS2,chr12,49760367,49921205,Down,chr10,105209781,105212148,Sense,Down,104909781,105512148,trans
lnc-CDK12-1,SPATS2,chr12,49760367,49921205,Down,chr17,37700243,37723895,Intergenic,Down,37400243,38023895,trans
lnc-CDYL2-6,SPATS2,chr12,49760367,49921205,Down,chr16,80188949,80597032,Sense,Down,79888949,80897032,trans
lnc-CLDN6-4,SPATA21,chr1,16713612,16763919,Down,chr16,3022793,3030474,Sense,Up,2722793,3330474,trans
lnc-CRBN-1,SPATS2,chr12,49760367,49921205,Down,chr3,3292370,3668980,Intergenic,Down,2992370,3968980,trans
lnc-DALRD3-2,HOXA11,NA,NA,NA,NA,chr3,49017350,49021925,Antisense,Up,48717350,49321925,trans
lnc-DHX15-1,SPATS2,chr12,49760367,49921205,Down,chr4,24427775,24526490,Sense,Down,24127775,24826490,trans
lnc-DISC1-1,SPATS2,chr12,49760367,49921205,Down,chr1,232254254,232322542,Intergenic,Down,231954254,232622542,trans
lnc-DNAH5-4,SPATS2,chr12,49760367,49921205,Down,chr5,13991053,13997879,Intergenic,Down,13691053,14297879,trans
lnc-DPY30-4,LHCGR,NA,NA,NA,NA,chr2,32070220,32092722,Intergenic,Down,31770220,32392722,trans
lnc-DPY30-4,SOX5,NA,NA,NA,NA,chr2,32070220,32092722,Intergenic,Down,31770220,32392722,trans
lnc-ENTPD5-5,HOXA11,NA,NA,NA,NA,chr14,74424714,74486102,Sense,Up,74124714,74786102,trans
lnc-ERV3-1-2,SPATS2,chr12,49760367,49921205,Down,chr7,64439556,64467121,Sense,Down,64139556,64767121,trans
lnc-FAM110B-11,SPATS2,chr12,49760367,49921205,Down,chr8,58348578,58353048,Intergenic,Down,58048578,58653048,trans
lnc-FAM138A-3,SPATS2,chr12,49760367,49921205,Down,chr1,141473,173862,Intergenic,Down,-158527,473862,trans
lnc-GAMT-2,HOXA11,NA,NA,NA,NA,chr19,1385157,1389650,Antisense,Up,1085157,1689650,trans
lnc-HRASLS-2,SPATS2,chr12,49760367,49921205,Down,chr3,192232810,192239187,Intergenic,Down,191932810,192539187,trans
lnc-IL17RA-13,TYRO3,chr15,41849873,41871536,Down,chr22,17338026,17398742,Intergenic,Down,17038026,17698742,trans
lnc-KCNT1-7,SPATA21,chr1,16713612,16763919,Down,chr9,138847104,138847404,Antisense,Up,138547104,139147404,trans
lnc-KHDRBS3-9,SPATS2,chr12,49760367,49921205,Down,chr8,137543021,137997178,Intergenic,Down,137243021,138297178,trans
lnc-KIAA1644-1,SPATS2,chr12,49760367,49921205,Down,chr22,44578910,44583619,Antisense,Down,44278910,44883619,trans
lnc-KNTC1-3,SPATS2,chr12,49760367,49921205,Down,chr12,123140234,123165633,Intergenic,Down,122840234,123465633,trans
lnc-LEP-1,SPATS2,chr12,49760367,49921205,Down,chr7,127946701,127947731,Antisense,Up,127646701,128247731,trans
lnc-LEPROTL1-9,SPATS2,chr12,49760367,49921205,Down,chr8,29661759,29711926,Antisense,Down,29361759,30011926,trans
lnc-MARCH10-1,SPATA21,chr1,16713612,16763919,Down,chr17,61006841,61044171,Intron,Up,60706841,61344171,trans
lnc-METRNL-1,SPATS2,chr12,49760367,49921205,Down,chr17,81061204,81063860,Intergenic,Down,80761204,81363860,trans
lnc-MTR-1,SPATS2,chr12,49760367,49921205,Down,chr1,237070070,237091621,Intergenic,Down,236770070,237391621,trans
lnc-MYB-13,SPATS2,chr12,49760367,49921205,Down,chr6,136265388,136282959,Sense,Down,135965388,136582959,trans
lnc-MYO19-2,SPATS2,chr12,49760367,49921205,Down,chr17,34831793,34842306,Intergenic,Down,34531793,35142306,trans
lnc-NAALADL2-8,SPATS2,chr12,49760367,49921205,Down,chr3,176002926,176015187,Intergenic,Down,175702926,176315187,trans
lnc-NAALADL2-8,TYRO3,chr15,41849873,41871536,Down,chr3,176002926,176015187,Intergenic,Down,175702926,176315187,trans
lnc-NBN-1,SPATS2,chr12,49760367,49921205,Down,chr8,90608314,90769955,Sense,Down,90308314,91069955,trans
lnc-NBPF9-4,SPATS2,chr12,49760367,49921205,Down,chr1,145013725,145016968,Antisense,Down,144713725,145316968,trans
lnc-NEDD1-8,SPATS2,chr12,49760367,49921205,Down,chr12,97867133,97876323,Intron,Down,97567133,98176323,trans
lnc-NRIP1-2,ADCYAP1R1,NA,NA,NA,NA,chr21,16741803,16999459,Intergenic,Down,16441803,17299459,trans
lnc-NTF3-3,SOX5,NA,NA,NA,NA,chr12,5541277,5634785,Sense,Down,5241277,5934785,trans
lnc-NUDT16-1,SPATS2,chr12,49760367,49921205,Down,chr3,131236670,131239724,Intergenic,Down,130936670,131539724,trans
lnc-OXSM-2,MTA3,chr2,42721709,42984087,Down,chr3,25824529,25831477,Antisense,Up,25524529,26131477,trans
lnc-PARN-10,SPATA21,chr1,16713612,16763919,Down,chr16,14399433,14497016,Antisense,Up,14099433,14797016,trans
lnc-PCK1-4,SPATS2,chr12,49760367,49921205,Down,chr20,56343878,56357386,Intergenic,Down,56043878,56657386,trans
lnc-PPIAL4G-5,SPAM1,chr7,123565286,123611468,Down,chr1,143211627,143240439,Intergenic,Down,142911627,143540439,trans
lnc-PPP4C-8,SPATA21,chr1,16713612,16763919,Down,chr16,30125432,30125826,Antisense,Up,29825432,30425826,trans
lnc-PTDSS2-1,SPATS2,chr12,49760367,49921205,Down,chr11,507274,515605,Antisense,Down,207274,815605,trans
lnc-RD3-5,SPATS2,chr12,49760367,49921205,Down,chr1,211565168,211572779,Antisense,Up,211265168,211872779,trans
lnc-RFC2-5,SPATS2,chr12,49760367,49921205,Down,chr7,73455277,73459294,Antisense,Down,73155277,73759294,trans
lnc-RHBDD3-1,SPATS2,chr12,49760367,49921205,Down,chr22,29637343,29652496,Antisense,Down,29337343,29952496,trans
lnc-RP11-404L6.2.1-4,SPATS2,chr12,49760367,49921205,Down,chr5,67124685,67143029,Intergenic,Down,66824685,67443029,trans
lnc-RP11-404L6.2.1-4,TYRO3,chr15,41849873,41871536,Down,chr5,67124685,67143029,Intergenic,Down,66824685,67443029,trans
lnc-RP11-404P21.6.1-9,HOXA11,NA,NA,NA,NA,chr14,96552847,96560227,Antisense,Up,96252847,96860227,trans
lnc-RRP1B-1,ADCYAP1R1,NA,NA,NA,NA,chr21,45141572,45158712,Sense,Down,44841572,45458712,trans
lnc-RTN4IP1-2,SPATS2,chr12,49760367,49921205,Down,chr6,107164787,107235416,Sense,Down,106864787,107535416,trans
lnc-RUNDC3B-1,SPATS2,chr12,49760367,49921205,Down,chr7,87075329,87214789,Antisense,Down,86775329,87514789,trans
lnc-SAP30-2,SPATS2,chr12,49760367,49921205,Down,chr4,174428626,174434499,Intergenic,Down,174128626,174734499,trans
lnc-SBF2-1,SPATS2,chr12,49760367,49921205,Down,chr11,10323788,10326390,Intergenic,Down,10023788,10626390,trans
lnc-SMAD4-2,SPATS2,chr12,49760367,49921205,Down,chr18,48688001,48692340,Intergenic,Down,48388001,48992340,trans
lnc-SNX11-7,SPATS2,chr12,49760367,49921205,Down,chr17,46206812,46208268,Intergenic,Down,45906812,46508268,trans
lnc-SPP1-1,SPATS2,chr12,49760367,49921205,Down,chr4,88843345,88855577,Intergenic,Down,88543345,89155577,trans
lnc-SPTBN5-1,SPATA21,chr1,16713612,16763919,Down,chr15,42117296,42120134,Antisense,Up,41817296,42420134,trans
lnc-SSR3-7,TYRO3,chr15,41849873,41871536,Down,chr3,156359230,156383752,Intergenic,Down,156059230,156683752,trans
lnc-ST6GAL2-1,SPATS2,chr12,49760367,49921205,Down,chr2,107871146,107982329,Sense,Down,107571146,108282329,trans
lnc-SYNM-2,SPATA21,chr1,16713612,16763919,Down,chr15,99679521,99685575,Antisense,Up,99379521,99985575,trans
lnc-TAL2-2,SPATS2,chr12,49760367,49921205,Down,chr9,108418159,108504764,Sense,Down,108118159,108804764,trans
lnc-TBCB-1,SPAM1,chr7,123565286,123611468,Down,chr19,36605190,36606453,Sense,Up,36305190,36906453,trans
lnc-TMEM234-4,HOXA11,NA,NA,NA,NA,chr1,32658801,32665958,Antisense,Up,32358801,32965958,trans
lnc-TRAPPC4-1,SPATA21,chr1,16713612,16763919,Down,chr11,118914898,118916205,Antisense,Up,118614898,119216205,trans
lnc-TSSK6-1,HOXA11,NA,NA,NA,NA,chr19,19465543,19468888,Antisense,Up,19165543,19768888,trans
lnc-UBE2N-1,SPATS2,chr12,49760367,49921205,Down,chr12,93397190,93771512,Sense,Down,93097190,94071512,trans
lnc-UBFD1-1,HOXA11,NA,NA,NA,NA,chr16,23487630,23490537,Antisense,Up,23187630,23790537,trans
lnc-USP40-2,HOXA11,NA,NA,NA,NA,chr2,234370671,234372610,Antisense,Up,234070671,234672610,trans
lnc-USP47-2,SPATS2,chr12,49760367,49921205,Down,chr11,11373972,11374854,Antisense,Up,11073972,11674854,trans
lnc-VN1R2-8,SPATA21,chr1,16713612,16763919,Down,chr19,53643080,53669074,Antisense,Up,53343080,53969074,trans
lnc-VPS13D-1,SPATS2,chr12,49760367,49921205,Down,chr1,12587485,12589505,Intergenic,Down,12287485,12889505,trans
lnc-VPS33B-6,HOXA11,NA,NA,NA,NA,chr15,91835593,91842399,Antisense,Up,91535593,92142399,trans
lnc-WDR26-1,SPATS2,chr12,49760367,49921205,Down,chr1,224789941,224803922,Intergenic,Down,224489941,225103922,trans
lnc-WDR27-1,SPATS2,chr12,49760367,49921205,Down,chr6,169818906,169846389,Intergenic,Down,169518906,170146389,trans
lnc-YPEL5-1,SPATS2,chr12,49760367,49921205,Down,chr2,30147349,30152828,Intergenic,Down,29847349,30452828,trans
lnc-ZNF146-1,SPATA21,chr1,16713612,16763919,Down,chr19,36795481,36812260,Sense,Up,36495481,37112260,trans
lnc-ZNF30-1,SPATS2,chr12,49760367,49921205,Down,chr19,35414102,35417732,Antisense,Down,35114102,35717732,trans
lnc-ZNF30-1,TYRO3,chr15,41849873,41871536,Down,chr19,35414102,35417732,Antisense,Down,35114102,35717732,trans
lnc-ZNF394-2,HOXA11,NA,NA,NA,NA,chr7,99074502,99078842,Antisense,Up,98774502,99378842,trans
lnc-ZNF514-2,SPATA21,chr1,16713612,16763919,Down,chr2,95836539,95846237,Antisense,Up,95536539,96146237,trans
lnc-ZNF775-1,MTA3,chr2,42721709,42984087,Down,chr7,150076417,150109558,Sense,Up,149776417,150409558,trans
lnc-ZNF862-1,SPATS2,chr12,49760367,49921205,Down,chr7,149473189,149524980,Sense,Down,149173189,149824980,trans
lnc-ZNF862-1,TYRO3,chr15,41849873,41871536,Down,chr7,149473189,149524980,Sense,Down,149173189,149824980,trans
MCM3AP-AS1,HOXA11,NA,NA,NA,NA,chr21,47649138,47672765,Sense,Up,47349138,47972765,trans
MIR205HG,SPATS2,chr12,49760367,49921205,Down,chr1,209602164,209605894,Sense,Down,209302164,209905894,trans
PPP3CB-AS1,HOXA11,NA,NA,NA,NA,chr10,75255282,75279828,Antisense,Up,74955282,75579828,trans
RAD51-AS1,TYRO3,chr15,41849873,41871536,Down,chr15,40978405,40987307,Sense,Down,40678405,41287307,trans
SATB1-AS1,TYRO3,chr15,41849873,41871536,Down,chr3,18475293,18959184,Sense,Down,18175293,19259184,trans
TMEM9B-AS1,SPATS2,chr12,49760367,49921205,Down,chr11,8985990,9000466,Sense,Down,8685990,9300466,trans
XLOC_1093784,SOX5,NA,NA,NA,NA,chr18,44546753,44554049,Antisense,Down,44246753,44854049,trans
XLOC_1483768,SPATS2,chr12,49760367,49921205,Down,chr20,58778522,58779015,Intron,Down,58478522,59079015,trans
XLOC_1623377,SPATA21,chr1,16713612,16763919,Down,chr3,196668669,196668950,Intron,Up,196368669,196968950,trans
XLOC_2396126,TYRO3,chr15,41849873,41871536,Down,chr7,56435206,56440872,Intergenic,Down,56135206,56740872,trans
XLOC_2558569,SPATS2,chr12,49760367,49921205,Down,chr8,56856615,56857165,Intron,Down,56556615,57157165,trans
XLOC_379275,SPATS2,chr12,49760367,49921205,Down,chr11,126164383,126174197,Antisense,Up,125864383,126474197,trans
XLOC_753809,SPATA21,chr1,16713612,16763919,Down,chr14,102969992,102970676,Intergenic,Up,102669992,103270676,trans
XLOC_931668,SPATS2,chr12,49760367,49921205,Down,chr16,46418240,46418507,Intergenic,Down,46118240,46718507,trans
XLOC_931842,SPATS2,chr12,49760367,49921205,Down,chr16,57075631,57081098,Sense,Down,56775631,57381098,trans
ZNF337-AS1,HOXA11,NA,NA,NA,NA,chr20,25604649,25658710,Antisense,Up,25304649,25958710,trans