Supplementary Table 2. All LLPS-related genes associated with overall survival. id HR HR.95L HR.95H p-value LAT 2.595516594 1.759844762 3.828011729 1.50E-06 RBFOX1 0.757478382 0.256749847 2.234756925 0.614829047 SYN2 1.257671655 0.627225269 2.521802087 0.518357761 NPHS1 0.850647843 0.575710057 1.256885724 0.41673576 ALDOB 0.862808192 0.805666184 0.924003007 2.43E-05 ACOT11 0.753193354 0.530429919 1.069510236 0.113119352 DRD3 6.709479839 0.042572849 1057.413843 0.46093378 WDR62 2.997037513 2.134118686 4.208872689 2.37E-10 CENPU 1.463404131 1.102093165 1.943167527 0.008490854 EGF 0.935733238 0.784942321 1.115491762 0.458756795 IFNG 1.437462724 1.183120542 1.746482298 0.000259694 SCD 1.054694379 0.919207711 1.210151112 0.447800276 FGF23 1.002234818 0.459781113 2.184680064 0.995520045 ASF1B 1.566588161 1.253069739 1.958548987 8.15E-05 FGF10 2.292382967 0.596420912 8.810924567 0.227184884 CACNA1G 1.86965633 1.114134566 3.137515792 0.017828762 GPR101 0.008521079 6.12E-09 11865.45535 0.509122775 ZP2 0.343632034 0.00370149 31.90147342 0.644025032 PADI4 0.900957247 0.445817216 1.820755079 0.771392029 PCSK6 0.868564528 0.766827267 0.983799576 0.02662823 BLM 2.496360658 1.684359678 3.699813417 5.18E-06 KIF18A 3.181248154 2.265165432 4.46781488 2.41E-11 PRMT8 0.527242078 0.078144217 3.557322867 0.511085626 SLC6A4 0.844157527 0.292771606 2.433985791 0.753850679 RELN 1.187903303 0.967605649 1.458356778 0.099906836 NTN1 0.886720435 0.698190221 1.126158898 0.32424383 TERT 1.601598382 1.116161835 2.29815901 0.01057487 PLA2R1 0.909032764 0.675329289 1.223611325 0.529342 HSPA2 1.0267159 0.846948992 1.244638756 0.788338207 LIM2 0.806987662 0.299635623 2.173403418 0.671393635 CHIA 0.556169401 0.090666593 3.411668978 0.52612621 TRPC7 1.507371146 0.851154399 2.669513046 0.159342471 TRIB3 1.386716171 1.230982571 1.562151881 7.49E-08 ATP2A1 1.999821611 1.489957612 2.684161244 3.92E-06 EIF4A1 1.49576038 1.239030422 1.805685377 2.78E-05 TDGF1 0.810256332 0.586398518 1.119571937 0.202185674 COL9A2 1.478402677 1.230678743 1.775991083 2.94E-05 RUNX1 1.668366628 1.372267701 2.02835584 2.83E-07 CAMP 0.757776757 0.43962627 1.306167655 0.318053785 HSPB3 1.239942464 0.901173943 1.706060553 0.186543686 P2RX2 0.263330619 0.00419822 16.51724186 0.527453478 PTCRA 1.235512035 0.672003228 2.271551572 0.49608953 POU4F1 1.083860729 0.780593335 1.50495018 0.630611898 KRT6A 1.334643639 1.051223991 1.694475828 0.017781831 LILRB1 1.499680264 1.163560779 1.93289507 0.001748332 ELAVL4 0.635008712 0.142507924 2.829569423 0.551405765 TOP2A 1.678891958 1.394107066 2.021852034 4.67E-08 DAZL 1.392004499 0.291989507 6.636116983 0.678091156 HIST1H3J 1.220306026 0.73055366 2.038381135 0.446892494 ASPM 2.482576445 1.868568927 3.298345444 3.55E-10 PKD2L1 1.106815987 0.773041816 1.584702929 0.579434347 TTK 3.27194879 2.389734052 4.479849495 1.42E-13 RAD51 1.973910329 1.458981974 2.670575824 1.04E-05 ALB 0.999968437 0.84103816 1.188931635 0.999714824 CENPF 2.120090248 1.696786693 2.648996882 3.77E-11 KHDRBS2 0.878441974 0.411207855 1.876569946 0.737883621 FANCA 2.238710518 1.593729786 3.144714259 3.35E-06 NTRK1 2.712731521 1.5579024 4.723602908 0.000420789 PDHA2 0.014980032 3.97E-07 565.6066734 0.43463663 UHRF1 1.827716039 1.474920713 2.264898643 3.56E-08 CLIC5 0.558871029 0.444782063 0.702224422 5.90E-07 CLIC3 1.403523341 1.159015175 1.699613439 0.000518543 ESYT3 0.663393038 0.283060495 1.554757134 0.344969528 CDC20 1.878849571 1.611240258 2.190905851 8.66E-16 CDKN3 2.03457346 1.687298813 2.453323105 1.02E-13 GSTO2 0.843589157 0.640503743 1.111067148 0.226107861 CDKN2A 1.619725503 1.318229485 1.990177533 4.45E-06 PFN3 1.470884153 0.592961928 3.648632552 0.405150363 IGF2BP3 2.036701822 1.637849978 2.532682705 1.59E-10 ATP2B2 0.809492892 0.667246144 0.982064487 0.032071363 TSKS 1.278672099 0.740409111 2.208241785 0.377875615 MYB 1.298296265 0.898647853 1.875677093 0.164322872 CCDC185 4.116965753 0.768653999 22.05076281 0.098396153 RNASET2 1.27078462 1.12803199 1.431602618 8.10E-05 HHIPL2 1.904179374 1.218657367 2.975322831 0.004678192 DDX47 2.886129108 1.851289224 4.499427275 2.89E-06 CDCA8 2.080270057 1.713591372 2.525411589 1.32E-13 MXD3 2.694097778 2.106141028 3.446190327 3.03E-15 ALDH1A2 0.97453958 0.825703389 1.150204063 0.760364991 U2AF1 3.721144731 1.424131626 9.723060604 0.00733029 CRYAA 0.566792705 0.125151265 2.566925482 0.461293233 AKR1B15 1.769184234 1.310357682 2.388670588 0.000195619 SLC25A31 0.751945169 0.134672622 4.198489099 0.745256145 ITK 1.117733397 0.856467812 1.458698074 0.412576622 TAGLN3 1.664787956 1.319036906 2.101168607 1.78E-05 KIF15 2.678012771 1.905691134 3.763334085 1.39E-08 CDK3 3.194807683 2.07044968 4.929748465 1.53E-07 FABP5 1.554965759 1.295074008 1.867011844 2.23E-06 KIF5A 2.026369124 1.161598733 3.534931391 0.012861148 PIH1D3 5427.174975 8.220256114 3583127.801 0.009434343 NTNG2 1.946869278 1.44933566 2.615198183 9.66E-06 CCR4 0.725052103 0.552741912 0.951077782 0.02021878 KIF2C 2.135267242 1.750211031 2.605037971 7.61E-14 ZBP1 1.822639008 1.403785102 2.366468307 6.61E-06 DTL 1.41337565 1.042820513 1.9156036 0.025731175 NDC80 2.847838952 2.196477366 3.692360696 2.83E-15 SH3GL2 0.80786894 0.657227044 0.993039209 0.042733645 CAND2 0.833522901 0.503677012 1.379376882 0.47862491 PDGFRA 1.19353436 1.022989078 1.392511708 0.024520277 KIF14 3.976957798 2.716551545 5.822158373 1.26E-12 BRCA2 0.94200939 0.506170019 1.753129696 0.850481012 MLKL 1.141482354 0.860155332 1.514821702 0.359375877 TP73 1.721062358 1.169568934 2.532604583 0.005875166 ARG1 1.28378583 0.61234065 2.691485626 0.508352268 CDC25C 2.731153325 2.028182646 3.677774534 3.66E-11 DISC1 0.582450455 0.37323693 0.908936134 0.017290553 HMMR 2.016546976 1.60984187 2.52600071 1.04E-09 RAB33A 0.832945837 0.654019469 1.060822803 0.138493305 CP 1.070858209 0.99683274 1.15038086 0.061045458 RAB11FIP4 0.551050412 0.347924781 0.872764956 0.011084849 FOXH1 6.426405651 2.393885867 17.25173709 0.000222049 CENPA 2.570377189 2.063083278 3.202410181 3.89E-17 RALYL 1.393680459 0.859708243 2.259307431 0.178075768 PSMA8 19.5820622 0.445487366 860.7587756 0.123302345 CHD5 0.939198274 0.551026037 1.600819812 0.817655091 TF 1.178078436 1.074556708 1.291573344 0.000478906 ATP2B3 1.845152143 1.254786227 2.713280045 0.001848107 CCNE2 3.100003908 1.722677421 5.578539608 0.000160436 PTTG1 1.846887131 1.580313548 2.158427409 1.22E-14 STX1B 1.682558819 1.214338886 2.331313122 0.001765344 MAPK4 0.867886682 0.544243834 1.383988657 0.551771242 RIMBP3 5.884421444 0.322571693 107.3448676 0.231590449 KIFC1 2.060346671 1.649262555 2.573894854 1.94E-10 IGF2BP2 1.470606462 1.288978844 1.677826891 9.80E-09 ELAVL3 0.886158946 0.495616877 1.58444499 0.683534985 PRKAR2B 1.343236476 1.006052553 1.793429403 0.045405193 PCBP3 1.618680594 1.337178932 1.959443724 7.78E-07 RUNX3 1.063128416 0.895516442 1.262111979 0.484358604 SPHK1 1.653968452 1.394787063 1.961311309 7.19E-09 KRT7 0.94285951 0.84869005 1.047477881 0.273096816 NEU4 1.304397916 0.929594199 1.830318997 0.124158077 CRABP1 1.005698765 0.83933515 1.205037112 0.950887202 PYHIN1 1.136543698 0.911656703 1.4169057 0.255217057 CCDC116 6.102483015 1.895794904 19.64363279 0.002426666 YPEL4 1.470534801 1.038015502 2.083275827 0.030013615 ACTG2 0.968869974 0.857272038 1.094995502 0.612502288 PIK3R6 1.576972624 1.294576835 1.920969531 6.06E-06 PABPC1L 1.634574115 1.432441502 1.865229773 2.96E-13 AKR1D1 0.796119648 0.323761717 1.95763261 0.619415166 HIST1H2AM 1.499235236 1.152332812 1.950570417 0.002561761 NUF2 2.932035442 2.330085716 3.689491667 4.52E-20 HIST1H2BM 1.192020223 0.748285193 1.898891259 0.459681268 HIST1H2AJ 0.978719471 0.63523783 1.507926256 0.92230119 APOA1 1.175194887 0.888178624 1.554960888 0.258496862 DNAJB13 1.199451976 0.999944212 1.438765309 0.0500703 GAL 1.675693939 1.201544885 2.336949882 0.002351074 APOBEC3G 1.360228248 1.122668259 1.648056646 0.001681002 CCNA2 2.185203817 1.762809804 2.708809374 9.84E-13 CCDC36 1.223598708 0.616883946 2.427026684 0.563601109 BIRC5 1.835850068 1.563788259 2.155244133 1.14E-13 ATP6V1G3 0.89656938 0.769717311 1.044327106 0.160700671 NDNF 1.051693007 0.95932354 1.152956363 0.282560382 ACAP1 1.506924917 1.215086611 1.86885666 0.000188603 NEK2 2.315957471 1.845358868 2.906566902 4.28E-13 PLK1 2.367741668 1.963954279 2.854547413 1.64E-19 SCIN 0.922443573 0.817123463 1.041338529 0.19185609 PKP1 1.055730303 0.902638496 1.234787211 0.497469132 KPNA7 1.12031861 0.673161999 1.864504815 0.662000988 MAP6 0.878900441 0.597072645 1.293755445 0.51287616 ACTL6B 1.142701846 0.680528921 1.918753882 0.613940044 GSDMA 0.9486803 0.655571117 1.372840089 0.779935541 TYRO3 1.719708029 1.223541882 2.417077624 0.001798782 TPTE2 1.179792012 0.683123817 2.037565015 0.553142726 PGK2 1661.111122 12.38838155 222732.0937 0.003007592 CELF6 2.368379907 0.261229635 21.4723853 0.443352807 NTNG1 1.618335391 1.01976618 2.568245043 0.041049222 PDIA2 1.301834312 1.095554876 1.546953614 0.002728286 ENOX1 0.695429464 0.436428432 1.108136188 0.126509261 HAP1 1.177836499 0.631515808 2.196776076 0.606777225 TUBB2B 1.381387056 1.159361076 1.645932608 0.000301513 ENO2 1.319053316 1.122353209 1.550226467 0.000776867 TUBA8 8.258421362 2.009457192 33.94027186 0.003414625 CALML5 1.745006858 0.578500659 5.263691383 0.32297463 SH3GL3 2.405140797 1.128825437 5.124532159 0.022969378